FastQCFastQC Report
Tue 17 Dec 2019
CCY3RACXX_l08_n02_QG2990.1fGM.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameCCY3RACXX_l08_n02_QG2990.1fGM.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17633222
Sequences flagged as poor quality0
Sequence length101
%GC46

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTATCAT323950.06.408232794-95
CATTAAA276650.06.33585994-95
TCATTAA303600.06.102690794-95
ATCATTA329250.06.0791494-95
GCCGTAT389700.06.078670594-95
CGTATCA348850.06.017699792-93
CCGTATC391950.05.723496494-95
CGCCGTA415450.05.69631394-95
TATCATT387550.05.56053894-95
GGTCGCC544150.05.36581694-95
ATTAAAA333150.05.331118694-95
TGGTCGC564650.05.11336894-95
Produced by FastQC (version 0.11.5)