FastQCFastQC Report
Tue 17 Dec 2019
CCY3RACXX_l08_n02_QG2987.fGM.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameCCY3RACXX_l08_n02_QG2987.fGM.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13570648
Sequences flagged as poor quality0
Sequence length101
%GC46

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGGGGGC56100.09.28338244-45
GGGGCCC25050.08.26099146-47
CATTAAA220550.07.71551694-95
TCATTAA245800.07.641708494-95
ATCATTA266000.07.480887494-95
GTATCAT273550.07.41038494-95
AGGGGCG49050.07.10977212-13
GCCGTAT343350.06.92627294-95
CGTATCA296350.06.879480494-95
CGCCGTA373850.06.74051294-95
GAGAGGG97250.06.64652549
TCGGGGG57500.06.550019340-41
CCGTATC337800.06.503290794-95
TATCATT318650.06.35426494-95
GGGCGGG68400.06.117987614-15
GGTCGCC496350.06.074533594-95
GGGGGAA104950.06.02558922-23
ATTAAAA262200.05.993423594-95
GAGGGGC43900.05.9846210-11
TGGTCGC518100.05.81054994-95
Produced by FastQC (version 0.11.5)