FastQCFastQC Report
Tue 17 Dec 2019
CCY3RACXX_l08_n02_FounderF.B1.b.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameCCY3RACXX_l08_n02_FounderF.B1.b.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11393874
Sequences flagged as poor quality0
Sequence length101
%GC49

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTCGGG35950.07.694927794-95
GAGAGGG27555.456968E-125.7388129
GTATCAT204700.05.55325394-95
AAAAAAA733700.05.35773994-95
GGAGAGG38800.05.03372968
CGTATCA232800.05.022748594-95
Produced by FastQC (version 0.11.5)