FastQCFastQC Report
Tue 17 Dec 2019
CCY3RACXX_l08_n02_FounderF.A1.a.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameCCY3RACXX_l08_n02_FounderF.A1.a.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11743953
Sequences flagged as poor quality0
Sequence length101
%GC49

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTATCAT159550.05.74062194-95
AAAAAAA595050.05.19976994-95
CGTATCA184600.05.12533494-95
Produced by FastQC (version 0.11.5)