FastQCFastQC Report
Tue 17 Dec 2019
CCY3RACXX_l08_n01_QG2987.mGF.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameCCY3RACXX_l08_n01_QG2987.mGF.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17452339
Sequences flagged as poor quality0
Sequence length101
%GC45

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGCTTGA274550.06.7645794-95
CTGCTTG292300.06.65024694-95
TATGCCG541250.06.161794-95
ACCTTAG13601.03682396E-106.15281322-23
ATGCCGT524650.06.02186194-95
GCTTGAA273000.06.0051594-95
GCCGTCT505300.05.99290994-95
GTATGCC585750.05.937486694-95
CCGTCTT518850.05.79126394-95
TGCCGTC522850.05.7155792-93
CGTATGC623850.05.70626494-95
CTTAGGA23850.05.68622624-25
TCTGCTT388200.05.640849694-95
GCTAGCG12551.4938269E-75.518005424-25
TTAAGTC16252.8194336E-105.504564324-25
CTCGTAT724250.05.31620694-95
CTTAGCA28350.05.29254924-25
TCTCGTA798250.05.28400594-95
TCGTATG670350.05.258033894-95
TCCTAAG23050.05.25766624-25
Produced by FastQC (version 0.11.5)