FastQCFastQC Report
Tue 17 Dec 2019
CCY3RACXX_l08_n01_QG2987.fGM.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameCCY3RACXX_l08_n01_QG2987.fGM.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13570648
Sequences flagged as poor quality0
Sequence length101
%GC46

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCTTGAA227250.07.605259458-59
TGCTTGA242500.07.513276658-59
CTGCTTG261550.06.858677456-57
CTTGAAA277200.06.54741760-61
GGTCACG51950.06.337221628-29
GCCGTCT464450.06.227370394-95
ATCTTAG19550.06.203708622-23
CGCTAGC13052.3646862E-106.195799424-25
CTTAGTC14003.274181E-116.187896724-25
TGCCGTC499000.06.120033394-95
ACTCTAG29100.06.053209322-23
TCTGCTT329350.05.980190894-95
GTATGCC562550.05.936563594-95
ATGCCGT511350.05.921844594-95
TATGCCG534300.05.92170794-95
TCTAGTC40650.05.896134424-25
ACGCTAG11804.0359737E-85.873244322-23
CCGTCTT460900.05.812942594-95
CGTATGC600450.05.721764694-95
ACTAGCG15504.674803E-105.58906824-25
Produced by FastQC (version 0.11.5)