FastQCFastQC Report
Tue 17 Dec 2019
CCY3RACXX_l08_n01_FounderF.A1.b.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameCCY3RACXX_l08_n01_FounderF.A1.b.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15833733
Sequences flagged as poor quality0
Sequence length101
%GC49

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCTAGT10850.014.63294424-25
CCTAGGC3800.014.43340324-25
CTAGTCA10400.014.15583826-27
CCTAGCG8000.014.07256924-25
CCTAGGT3801.03682396E-1012.91409824-25
GCTAGGT7000.012.37148924-25
CCTAGTC4459.094947E-1212.32515224-25
CTAGGTA4002.4556357E-1012.268393526-27
GCTAGAC7500.011.93161324-25
CGTCTAG7850.011.76736122-23
GCCTAGT6150.011.73447524-25
TCTAGTC11100.011.7027624-25
CGCTAGG7700.011.62170124-25
TCTAGCG8550.011.47919824-25
TGCTAGG6050.011.45129524-25
GTCCTAG4104.7039066E-911.26509522-23
GCTAGGC7200.011.2259824-25
ACCTAGC6950.011.21444324-25
CTAGGCG7750.011.17424926-27
TCTAGCT9000.010.90523824-25
Produced by FastQC (version 0.11.5)