FastQCFastQC Report
Tue 17 Dec 2019
CCY3RACXX_l07_n01_DJ53.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameCCY3RACXX_l07_n01_DJ53.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences42521
Sequences flagged as poor quality0
Sequence length101
%GC37

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATCACA250.00498815557.01
ATTCCCG250.00498815557.01
GATCCGC352.7574296E-454.285711
GATCACG352.7574296E-454.285711
GATCCTT707.681956E-847.4999961
GATCCAC550.00255188834.5454561
GATCATC550.00255188834.5454561
GATCTTC550.00255188834.5454561
ATCCTTT753.029205E-431.6666642
ATCTTCT650.005781791629.230772
ATCTGAA650.005781791629.230772
Produced by FastQC (version 0.11.5)