FastQCFastQC Report
Tue 17 Dec 2019
CCY3RACXX_l06_n01_SAL5D-S-R2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameCCY3RACXX_l06_n01_SAL5D-S-R2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1407
Sequences flagged as poor quality0
Sequence length101
%GC45

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCAGAAAACTGGCCTAACGACGTTTGGNCAGTTCCATCAACATCATAGCC20.14214641080312723No Hit
ATCTTTTGTTTTCCACTGCATTTCTGNGAGACCTTTATAATGTTTGTAAG20.14214641080312723No Hit
AATGTTTATGTTGGTTTCATGGTTTGGTCTAACTTTACCGCTACTAAATG20.14214641080312723No Hit
TTCGTATGCAGGGCGTTGAGTTCGATAATGGTGATATGTATGTTGACGGC20.14214641080312723No Hit
GGGTGATGCTGGTATTAAATCTGCCATTCAAGGCTCTAATGTTCCTAACC20.14214641080312723No Hit

[OK]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)