FastQCFastQC Report
Sun 5 May 2019
CCLM1ACXX_l08_n01_undetermined.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameCCLM1ACXX_l08_n01_undetermined.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13515751
Sequences flagged as poor quality0
Sequence length51
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTCTGA4150.031.97098716
ACGTCTG4700.029.18610415
CACACGT5700.024.06377412
ACACGTC5750.023.463913
CACGTCT5900.022.867714
CAGTCAC5300.022.06156327
ATCGGAA10200.020.5265332
TCGGAAG10550.020.0589523
CCGAGAC4250.019.05576729
GATCGGA11150.018.7781931
TAGCGTA600.006490872718.76157632
GAGACCG4350.017.59237331
CGGAAGA12200.017.161534
ACCGATC4200.017.15483934
CTCCAGT8250.016.89843824
GCACACG8400.016.59667811
AGCACAC8300.016.52572410
CCAGTCA7100.016.15178726
CGAGACC5500.015.54704630
AACTCCA9900.014.08229122
Produced by FastQC (version 0.11.5)