Loading report..

Highlight Samples

Regex mode off

    Rename Samples

    Click here for bulk input.

    Paste two columns of a tab-delimited table here (eg. from Excel).

    First column should be the old name, second column the new name.

    Regex mode off

      Show / Hide Samples

      Regex mode off

        Export Plots

        px
        px
        X

        Download the raw data used to create the plots in this report below:

        Note that additional data was saved in multiqc_data when this report was generated.


        Choose Plots

        If you use plots from MultiQC in a publication or presentation, please cite:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

        Save Settings

        You can save the toolbox settings for this report to the browser.


        Load Settings

        Choose a saved report profile from the dropdown box below:

        About MultiQC

        This report was generated using MultiQC, version 1.0.dev0

        You can see a YouTube video describing how to use MultiQC reports here: https://youtu.be/qPbIlO_KWN0

        For more information about MultiQC, including other videos and extensive documentation, please visit http://multiqc.info

        You can report bugs, suggest improvements and find the source code for MultiQC on GitHub: https://github.com/ewels/MultiQC

        MultiQC is published in Bioinformatics:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

        A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.

         Loading report..

        Report generated on 2018-02-13, 05:02 based on data in: /mnt/gencore/sites/core-fastqc.bio.nyu.edu/html/CBNFWACXX/5


        General Statistics

        Showing 30/30 rows and 3/5 columns.
        Sample Name% Dups% GCM Seqs
        CBNFWACXX_l05n01_3003_d-2.351000000be57d
        60.5%
        55%
        14.8
        CBNFWACXX_l05n01_3003_d5.351000000be77b
        54.6%
        54%
        14.0
        CBNFWACXX_l05n01_3007_d1.351000000be6a3
        62.6%
        55%
        12.3
        CBNFWACXX_l05n01_3009_d1.351000000be646
        79.9%
        57%
        13.9
        CBNFWACXX_l05n01_3010_d8.351000000be24a
        59.6%
        54%
        13.8
        CBNFWACXX_l05n01_3012_d-2.351000000be312
        55.8%
        54%
        12.0
        CBNFWACXX_l05n01_3016_d8.351000000be48b
        49.6%
        53%
        14.6
        CBNFWACXX_l05n01_3021_d8.351000000be1c1
        46.7%
        53%
        12.8
        CBNFWACXX_l05n01_3023_d3.351000000be503
        45.5%
        52%
        14.1
        CBNFWACXX_l05n01_3024_d8.351000000be399
        59.5%
        54%
        13.8
        CBNFWACXX_l05n01_3025_d-2.351000000be5e7
        54.3%
        54%
        11.1
        CBNFWACXX_l05n01_3028_d5.351000000be121
        46.4%
        52%
        13.2
        CBNFWACXX_l05n01_3030_d1.351000000be2c0
        73.6%
        57%
        13.2
        CBNFWACXX_l05n01_3031_d3.351000000be6f3
        58.9%
        54%
        13.6
        CBNFWACXX_l05n01_3031_d5.351000000be411
        58.6%
        54%
        13.9
        CBNFWACXX_l05n02_3003_d-2.352000000be57a
        59.3%
        55%
        14.8
        CBNFWACXX_l05n02_3003_d5.352000000be778
        53.6%
        54%
        14.0
        CBNFWACXX_l05n02_3007_d1.352000000be6a0
        61.8%
        55%
        12.3
        CBNFWACXX_l05n02_3009_d1.352000000be643
        79.1%
        57%
        13.9
        CBNFWACXX_l05n02_3010_d8.352000000be247
        59.3%
        54%
        13.8
        CBNFWACXX_l05n02_3012_d-2.352000000be31f
        55.4%
        54%
        12.0
        CBNFWACXX_l05n02_3016_d8.352000000be488
        48.2%
        53%
        14.6
        CBNFWACXX_l05n02_3021_d8.352000000be1ce
        45.3%
        53%
        12.8
        CBNFWACXX_l05n02_3023_d3.352000000be500
        44.3%
        52%
        14.1
        CBNFWACXX_l05n02_3024_d8.352000000be396
        58.7%
        54%
        13.8
        CBNFWACXX_l05n02_3025_d-2.352000000be5e4
        53.4%
        54%
        11.1
        CBNFWACXX_l05n02_3028_d5.352000000be12e
        45.3%
        52%
        13.2
        CBNFWACXX_l05n02_3030_d1.352000000be2cd
        73.1%
        57%
        13.2
        CBNFWACXX_l05n02_3031_d3.352000000be6f0
        57.9%
        54%
        13.6
        CBNFWACXX_l05n02_3031_d5.352000000be41e
        57.4%
        54%
        13.9

        Lane Statistics

        Lane Statistics

        Showing 1/1 rows and 4/4 columns.
        LaneTotal # of Single-End ReadsTotal # PF ReadsUndetermined % PhiX Aligned
        5.0
        213193001
        205303282
        2.0
        1.4

        Lane 5 Demultiplexing Report

        Lane 5 Demultiplexing Report
        Total Read Count: Total number of PF (Passing Filter) reads in this library.
        Portion: The proportion of reads that represent the individual library in the entire Library Pool.
        Perfect: The percentage of reads in this library which have a barcode perfectly matching the barcode specified in TuboWeb. The remainder of reads have mismatches upto the max number of mismatches specified in TuboWeb (Allowed barcode mismatch option in your Library Pool).

        Showing 15/15 rows and 3/3 columns.
        LibraryTotal Read CountPortion (%)Perfect (%)
        3021_d8
        12750186
        6.3
        98.1
        3023_d3
        14145162
        7.0
        98.6
        3031_d5
        13869934
        6.9
        98.5
        3030_d1
        13243095
        6.6
        98.6
        3010_d8
        13752377
        6.8
        98.6
        3003_d5
        13981144
        6.9
        98.4
        3007_d1
        12296787
        6.1
        98.4
        3028_d5
        13234519
        6.6
        98.7
        3016_d8
        14627199
        7.3
        98.3
        3012_d-2
        12035133
        6.0
        98.6
        3003_d-2
        14829159
        7.4
        98.4
        3025_d-2
        11136410
        5.5
        98.2
        3024_d8
        13806597
        6.9
        98.4
        3009_d1
        13936970
        6.9
        98.6
        3031_d3
        13604131
        6.8
        98.3

        FastQC

        FastQC is a quality control tool for high throughput sequence data, written by Simon Andrews at the Babraham Institute in Cambridge.

        Sequence Quality Histograms

        The mean quality value across each base position in the read. See the FastQC help.

        loading..

        Per Sequence Quality Scores

        The number of reads with average quality scores. Shows if a subset of reads has poor quality. See the FastQC help.

        loading..

        Per Base Sequence Content

        The proportion of each base position for which each of the four normal DNA bases has been called. See the FastQC help.

        Click a heatmap row to see a line plot for that dataset.

        rollover for sample name
        Position: -
        %T: -
        %C: -
        %A: -
        %G: -

        Per Sequence GC Content

        The average GC content of reads. Normal random library typically have a roughly normal distribution of GC content. See the FastQC help.

        loading..

        Per Base N Content

        The percentage of base calls at each position for which an N was called. See the FastQC help.

        loading..

        Sequence Length Distribution

        All samples have sequences of a single length (101bp).


        Sequence Duplication Levels

        The relative level of duplication found for every sequence. See the FastQC help.

        loading..

        Overrepresented sequences

        The total amount of overrepresented sequences found in each library. See the FastQC help for further information.

        loading..

        Adapter Content

        The cumulative percentage count of the proportion of your library which has seen each of the adapter sequences at each position. See the FastQC help. Only samples with ≥ 0.1% adapter contamination are shown.

        loading..