FastQCFastQC Report
Tue 5 Dec 2017
CBN9DACXX_l07n02.332000000aae14.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameCBN9DACXX_l07n02.332000000aae14.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences213157651
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCCCGAC6327418129.68421762163255No Hit
CAGTACTG4836523922.68989115478665No Hit
AGTAGTCT4587607321.522132930616692No Hit
GCAGTAGA4473528620.986948293964826No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.2)