FastQCFastQC Report
Tue 5 Dec 2017
CBN9DACXX_l04n02.332000000aadec.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameCBN9DACXX_l04n02.332000000aadec.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences180575707
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCCCGT5070690528.08069027801176No Hit
ACAAGGTA4752646326.31941128160722No Hit
GTGGTACC3673185320.341525230744356No Hit
TACTATAG3457919319.149415818153216No Hit
CGTCCGTA1983600.10984866308733322No Hit
CGTCCCAT1815720.1005517314685081No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.2)