FastQCFastQC Report
Tue 5 Dec 2017
CBN9DACXX_l03n02.332000000aadb5.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameCBN9DACXX_l03n02.332000000aadb5.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences188301581
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTTCCTC5010068126.606617285916467ABI Solid3 Adapter A (100% over 8bp)
CCGGGTAT4734588325.14364603237187No Hit
ATCATGCA4150341322.04092646465884No Hit
TAACAAGG3850564320.448921775117757No Hit
CCGGTATA1997850.10609841879128991No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.2)