FastQCFastQC Report
Tue 5 Dec 2017
CBN9DACXX_l02n02.332000000aadc2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameCBN9DACXX_l02n02.332000000aadc2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences204341248
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTAGACC5081192624.86621105495059No Hit
ATCTCTGT4822497523.60021555706658No Hit
GGAGAGAG4785192423.41765280791473No Hit
TAGCTCTA4559471022.313023164075027No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.2)