FastQCFastQC Report
Wed 3 Apr 2019
CBKDUACXX_l07_n02_C1W1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameCBKDUACXX_l07_n02_C1W1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11116642
Sequences flagged as poor quality0
Sequence length51
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGGTAG2654.851063E-811.88561615
CGTGACT9750.010.3933582
GTACTCG20100.09.7459094
GTAGAAC13300.09.4727911
CGTGTAG10650.09.08360915
AATCCGC14450.09.0364275
GGAAAAT48100.08.9891751
CGAAAAT11400.08.8893771
GCGTGAC13600.08.6104951
AATTGAC17100.08.5576365
AAAATCC35400.08.5240443
CACTCGT20350.08.40253335
GCGGAAA24750.08.3709791
TACTCGA23100.08.2840655
CGCGATA4355.496313E-78.27545329
ACACGCG10100.08.2422046
AATCGAA19150.08.2293565
AAAAATC32150.08.12503052
AGTACTC25650.08.0768973
CGCCTAG6155.14774E-108.047585542
Produced by FastQC (version 0.11.5)