FastQCFastQC Report
Tue 21 Nov 2017
CAWVTACXX_l06n01_trinidad_4.351000000a8aa3.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameCAWVTACXX_l06n01_trinidad_4.351000000a8aa3.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences33378870
Sequences flagged as poor quality0
Sequence length101
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG198800.017.2485925
CCTATAC137800.016.509643
GTATAGG145200.016.4660361
CTATACT201050.016.3729444
GTATTGG233400.015.1540281
TATACAG188800.014.3543855
GTATAAG145350.014.2985961
TACACTG157050.014.2146465
GTATATA427200.014.1968871
TATACCG111550.014.0342885
CTACACT149750.013.8649814
GTATAGA166950.013.795331
TAGACTG109100.013.7858765
TACACAG146900.013.7801515
ACTGTGC147100.013.7290978
TCTATAC163050.013.5158693
ACAGTGC166550.013.4888758
CCTACAC136100.013.29212953
TTATACT245800.013.161214
TAGACAG114000.013.1518365
Produced by FastQC (version 0.11.2)