FastQCFastQC Report
Tue 21 Nov 2017
CAWVTACXX_l06n01_obar_23.351000000a8a53.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameCAWVTACXX_l06n01_obar_23.351000000a8a53.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences42493155
Sequences flagged as poor quality0
Sequence length101
%GC43

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTTCTGC1234700.020.23245294-95
TTCTGCT993950.019.66159694-95
TCTTCTG1588450.017.71239994-95
TCTGCTT738600.017.69057894-95
GTCTTCT1898550.016.92037694-95
GTATTGG261650.015.5863791
TATACCG95800.014.9576865
CGTCTTC2218350.014.66338294-95
GTATAGG125750.014.180281
CTGCTTG490400.014.17064494-95
GTATAAG156000.014.1471031
ACTGTGC107300.013.9714418
GTATATA436300.013.964011
CCGTCTT2556750.013.87768794-95
TATACAG160000.013.6851115
CTATACT185450.013.5917834
TACACCG87250.013.5507055
GTATTAT267750.013.1141141
TTATACT289500.013.0519164
GCCGTCT2950100.012.91617894-95
Produced by FastQC (version 0.11.2)