FastQCFastQC Report
Tue 21 Nov 2017
CAWVTACXX_l03n02_g11.352000000a8c34.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameCAWVTACXX_l03n02_g11.352000000a8c34.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46088523
Sequences flagged as poor quality0
Sequence length101
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAGACTG144600.017.1828145
GTATTGG339100.015.7758111
TATACTG243400.015.6926535
GTATAGG171600.014.6460161
TACACCG183600.014.5937625
TATACCG147600.014.290835
GTATATA531900.014.2108921
GTCTAGG146250.014.1960231
GTCTATA202100.014.1752961
TATACAG239550.014.1401565
GTACCGT127350.013.6897486
AGTACCG134450.013.6038175
TATAGAC221050.013.4326063
GTATAAG169850.013.2864571
CTATACT236150.013.0764124
GTGTAGG210900.013.0431681
CCTATAC168050.013.0326633
CTACACC268250.012.94615654
TACACAG208700.012.8841225
ACTGTGC204700.012.8791158
Produced by FastQC (version 0.11.2)