FastQCFastQC Report
Tue 21 Nov 2017
CAWVTACXX_l03n01_g11.351000000a8c37.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameCAWVTACXX_l03n01_g11.351000000a8c37.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46088523
Sequences flagged as poor quality0
Sequence length101
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG244250.016.8226135
TAGACTG149000.016.737285
TACACCG180700.015.4834965
GTATTGG330400.015.130541
TATACAG246000.014.8105825
GTATAAG166000.014.3705821
TATACCG150350.014.2174255
TACACTG202200.014.1425335
GTATAGG169900.013.8728911
GTCTATA199850.013.862551
GTGTAGG196450.013.5461121
ACTGTGC209400.013.520128
CTATACT242550.013.4936324
GTATATA552900.013.4679371
GTACCGT124900.013.349246
TATAGAC214000.013.2958463
GTGTAGA221900.013.0846651
AGACTGA279750.013.0747226
AGTACCG137600.012.9801965
CTAAGAC181750.012.9631383
Produced by FastQC (version 0.11.2)