FastQCFastQC Report
Sun 3 Sep 2017
CAWHCACXX_l08n02_ogla_8.3520000009ba9a.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameCAWHCACXX_l08n02_ogla_8.3520000009ba9a.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences39611301
Sequences flagged as poor quality0
Sequence length101
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTATAGG182850.015.4951081
TATACTG261000.015.1491555
TATACCG129650.014.185485
GTATTGG341850.014.04523851
GTATATA599800.013.7748411
GTATAAG187950.013.6329461
TTATACT319700.013.1429584
TATACAG239100.013.0385675
GTATTAT314650.012.9478121
CTATACT267600.012.8598514
GTATAAT299650.012.8503241
CCTATAC183850.012.5135363
TAGACTG129950.012.5070665
TAGACAG140600.012.5061035
TACACTG185150.012.5000245
TAATACT343550.012.34122854
ATTATAC297200.012.1392343
GTCTAGG142200.012.1352941
ACTGTGC172500.012.1145128
GTGTAGG162750.012.0926831
Produced by FastQC (version 0.11.2)