FastQCFastQC Report
Sun 3 Sep 2017
CAWHCACXX_l08n01_ogla_13.3510000009bd06.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameCAWHCACXX_l08n01_ogla_13.3510000009bd06.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26395215
Sequences flagged as poor quality0
Sequence length101
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTATTGG254800.015.514311
TAGACTG81950.015.4206475
TATACTG173500.015.3614875
GTATAGG122600.015.1528681
GTATAAG131250.014.5162231
TATACAG156450.014.1811425
TACACTG121150.014.0779985
TATACCG92900.014.0121485
ACTGTGC116900.013.8542788
CTATACT178150.013.8138214
GTATATA389200.013.4529431
ACAGTGC129300.013.3337448
TACACCG87200.013.293625
TCTATAC142750.013.1459163
TATTGGG285450.013.1315762
TGCGTTC184200.013.0726119
GTGCGTT198200.012.9399958
GGTGCGT200450.012.8895237
CCTATAC117250.012.6013593
TAGACAG97050.012.5807785
Produced by FastQC (version 0.11.2)