FastQCFastQC Report
Sun 3 Sep 2017
CAWHCACXX_l08n01_ogla_10.3510000009bb72.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameCAWHCACXX_l08n01_ogla_10.3510000009bb72.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32467956
Sequences flagged as poor quality0
Sequence length101
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG215200.016.690175
GTATAGG148600.015.8915761
GTATTGG270450.015.8119321
TATACCG103900.015.7298325
TAGACTG108100.015.1626325
TACACTG151550.014.8281325
GTGTAGG143350.014.7831351
TACACCG112300.014.7647775
CTATACT216650.014.6048374
TATACAG186850.014.3405975
GTATAAG145800.014.1762431
CCTAGAC113300.014.0893383
GTCTAGG122150.014.0424571
TACACAG147800.013.8864285
CCTATAC145100.013.8828833
ACTGTGC145600.013.732968
ACTGCGC73250.013.6810128
CTACACC178150.013.2274784
TCTATAC172800.013.1971063
TATTGGG293500.013.1116742
Produced by FastQC (version 0.11.2)