FastQCFastQC Report
Sun 3 Sep 2017
CAWHCACXX_l07n01_ogla_7.3510000009bddd.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameCAWHCACXX_l07n01_ogla_7.3510000009bddd.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences42944094
Sequences flagged as poor quality0
Sequence length101
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG277000.017.2518625
TATACCG149900.015.8447775
GTATAGG210950.014.6836281
GTATTGG386100.014.1502261
GTATAAG214150.013.9761571
TACACTG197200.013.6823025
TTATACT347200.013.5037764
CCTATAC197100.013.49673753
TAGACTG134850.013.4916675
TATACAG261100.013.3902525
CTATACT289500.013.3565294
TACACCG138950.013.2986885
ATACTGT286800.013.0829616
ACTGTGC181950.013.0778618
GTATATA636600.012.9926421
CCTAGAC143650.012.8969313
GTATAGA251300.012.68514251
GTCTAGG158050.012.5645551
TCTATAC233500.012.5523683
GTATTAT349700.012.4984891
Produced by FastQC (version 0.11.2)