FastQCFastQC Report
Sun 3 Sep 2017
CAWHCACXX_l07n01_ogla_6.3510000009bcf8.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameCAWHCACXX_l07n01_ogla_6.3510000009bcf8.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences41527108
Sequences flagged as poor quality0
Sequence length101
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG277550.016.327995
GTATTGG375700.015.71828651
TATACCG137750.015.4149275
GTATAAG202300.014.7951681
TACACTG196900.014.4271665
GTATAGG193600.014.3802841
TAGACTG140250.014.0562935
CCTATAC192150.013.9929553
ACTGTGC184800.013.8270498
TACACCG137650.013.5970785
TATACAG255850.013.51672655
GTATATA626750.013.4851841
CTACACT192450.013.4772194
TATTGGG415600.013.4306112
GTATTAT329050.013.4275361
CTATACT288600.013.250284
GTATAGA234550.013.0647021
TACACAG182550.013.0371135
ATAATAC325650.012.8662183
TGCGTTC256400.012.8555499
Produced by FastQC (version 0.11.2)