FastQCFastQC Report
Sun 3 Sep 2017
CAWHCACXX_l07n01_ogla_1.3510000009ba80.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameCAWHCACXX_l07n01_ogla_1.3510000009ba80.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences47696187
Sequences flagged as poor quality0
Sequence length101
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG306950.016.4972365
GTATTGG400850.015.2061961
TATACCG159450.014.4490345
GTATAGG225650.014.2116411
GTATAAG236700.014.110191
TACACTG206050.013.8094335
CCTATAC217000.013.6382063
CTATACT324800.013.3236744
ACTGTGC206900.013.1994868
GTCTAGG173300.013.049211
GTGTAGG187000.012.9824041
GTATATA668550.012.9049941
TAGACTG146650.012.7301085
GTATAGA269100.012.5525431
TCTATAC257600.012.4660753
TATACAG280950.012.4104815
TAGACGG82450.012.3294795
TATTGGG476900.012.2519922
TACACCG154850.012.0866695
GTATTAG253100.012.069651
Produced by FastQC (version 0.11.2)