FastQCFastQC Report
Sun 3 Sep 2017
CAWHCACXX_l06n02_ogla_46.3520000009ba4a.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameCAWHCACXX_l06n02_ogla_46.3520000009ba4a.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences36944854
Sequences flagged as poor quality0
Sequence length101
%GC44

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG229950.015.5222075
GTATTGG337000.014.5011161
TATACCG119950.014.4227515
TATACAG214650.013.6394485
GTATATA497800.013.6367691
CTATACT231700.013.6007824
GTATAGG164700.013.3059381
GTATAAG179600.013.0225771
GTATTAT283300.012.719231
GTATAGA202300.012.6892531
TCTATAC193250.012.642383
TAGACTG118400.012.5643395
TTATACT285850.012.4875764
GTCTAGG130300.012.4043111
TAATACT306350.012.2570414
ATAATAC282350.012.2386033
CCTATAC160800.012.2081323
TATTGGG384850.012.1664892
ACTATAC195950.012.1528373
GTATAAT270650.012.1017831
Produced by FastQC (version 0.11.2)