FastQCFastQC Report
Sun 3 Sep 2017
CAWHCACXX_l06n02_ogla_42.3520000009bb56.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameCAWHCACXX_l06n02_ogla_42.3520000009bb56.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences29175547
Sequences flagged as poor quality0
Sequence length101
%GC43

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG180350.015.1525695
GTATATA431200.012.9095261
TATACCG98150.012.5897665
GTATAGG133150.012.5670591
GTATAAG142350.012.1555911
GTATAAT236950.011.9971091
GTATAGA170300.011.8354111
CTATACT195050.011.6722534
TAGACTG88950.011.5944015
GTATTGG234000.011.5185911
TATACAG168650.011.4976325
TTATACT241400.011.3803524
CCTATAC127950.011.3300183
GTATTAT242800.011.2773221
GTATTAG154850.011.205051
ACTGTGC121300.011.1982518
ATAATAC233000.011.0156183
TAATACT255750.010.9834044
TACACTG123950.010.8894615
ATTATAC225900.010.6885443
Produced by FastQC (version 0.11.2)