FastQCFastQC Report
Sun 3 Sep 2017
CAWHCACXX_l06n01_ogla_46.3510000009ba4d.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameCAWHCACXX_l06n01_ogla_46.3510000009ba4d.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences36944854
Sequences flagged as poor quality0
Sequence length101
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG237350.015.8538155
TATACCG122650.015.2237925
GTATATA506700.014.1974151
GTATAAG174850.014.1037961
CTATACT237200.013.820774
GTATTGG331000.013.5081511
GTATAGG158250.013.421411
GTATTAT282800.013.1725841
GTATTAG194050.012.879721
TTATACT286900.012.6686044
CCTATAC162550.012.6560843
TAATACT305200.012.5316774
TATACAG213650.012.4087815
GTATAGA200850.012.372691
ATTATAC268100.012.15698053
TCTATAC190850.012.0241233
GTATTAC160450.011.9639871
ACTGTGC157400.011.798338
TAGACTG115250.011.7077995
TAGACAG128500.011.6467645
Produced by FastQC (version 0.11.2)