FastQCFastQC Report
Sun 3 Sep 2017
CAWHCACXX_l06n01_ogla_42.3510000009bb59.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameCAWHCACXX_l06n01_ogla_42.3510000009bb59.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences29175547
Sequences flagged as poor quality0
Sequence length101
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG91650.014.6706175
TATACTG186600.014.2074795
TATACAG171900.012.8520245
GTATAAG145000.012.845221
GTATATA437550.012.7160641
GTATAGG133100.012.4943461
GTATTGG234900.012.3387261
GTATTAT240850.011.9747251
GTATAAT235050.011.7648451
CTATACT191600.011.6793824
GTATTAG161850.011.5959911
ATACTGT193100.011.535676
CCTATAC128500.011.3508843
TAGACTG92200.011.3366895
TTATACT241750.011.3004524
GTATAGA172250.011.1441171
TCTATAC153600.011.0735353
GTATTAA229700.010.8804851
TAATACT261050.010.7379854
ACTGTGC124950.010.6811468
Produced by FastQC (version 0.11.2)