FastQCFastQC Report
Sun 3 Sep 2017
CAWHCACXX_l05n02_ogla_53.3520000009bab3.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameCAWHCACXX_l05n02_ogla_53.3520000009bab3.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32855953
Sequences flagged as poor quality0
Sequence length101
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTATAGG151150.015.7743131
GTATAAG157050.015.3959671
TATACTG208550.015.1455615
CCTATAC147000.014.9742863
TATACCG100550.014.6910295
TACACTG151250.014.4456265
GTATTGG269350.014.3488141
GTGTAGG135750.014.1289541
CTATACT221050.013.9791354
GTCTAGG116750.013.7520211
CCTAGAC111550.013.1409953
TAGACTG104450.012.7782625
CTACACT148850.012.7528744
GTATATA443950.012.733571
GTATAGA181600.012.6793381
TACACCG109450.012.671885
TCTATAC179350.012.5680943
GTACTAG231750.012.3416771
TAGACAG119750.012.2958945
ACAGTGC157750.012.2776198
Produced by FastQC (version 0.11.2)