FastQCFastQC Report
Sun 3 Sep 2017
CAWHCACXX_l05n02_ogla_47.3520000009bdcd.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameCAWHCACXX_l05n02_ogla_47.3520000009bdcd.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26636322
Sequences flagged as poor quality0
Sequence length101
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTATTGG249900.015.0750471
GTATAGG116250.014.7978611
TATACTG170600.014.72855955
GTATATA364450.014.727331
TATACAG156450.013.87472255
TATACCG84950.013.8107495
CTATACT171900.013.2462114
GTATAGA147700.013.1109271
GTATAAG120250.013.0668691
GTGTAGG113700.012.9321231
ACTGTGC118150.012.8973528
GTATTAT210250.012.8899711
TATTGGG276050.012.8617832
GTATTAG135950.012.8302831
TAGACTG92550.012.7792855
GTCCTAG94800.012.5704881
TCTATAC142550.012.5374353
CCTAGAC84350.012.5305623
TGCGTTC172600.012.4866049
TAGACAG94900.012.4127835
Produced by FastQC (version 0.11.2)