FastQCFastQC Report
Sun 3 Sep 2017
CAWHCACXX_l04n02_obar_32.3520000009bac0.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameCAWHCACXX_l04n02_obar_32.3520000009bac0.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences39133680
Sequences flagged as poor quality0
Sequence length101
%GC44

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG257100.016.2063055
GTATAGG188550.015.9790641
GTATTGG355550.015.5842711
TATACCG130550.014.993635
CCTATAC188800.014.4712733
CTATACT260950.014.224
GTCTAGG144650.014.09378051
GTATAGA227650.014.0695721
GTATAAG193800.014.05042651
TACACTG173600.013.9574785
CCTAGAC134250.013.8389573
TACACCG124950.013.7264245
TAGACAG143850.013.6734135
GTATATA565350.013.6423671
TATACAG237500.013.4228715
ACTGTGC173400.013.3934688
TCTATAC212600.013.1865023
TACACAG167900.013.0730755
TATTGGG409550.013.05229952
GGTGCGT241650.013.0500887
Produced by FastQC (version 0.11.2)