FastQCFastQC Report
Sun 3 Sep 2017
CAWHCACXX_l03n02_ogla_58.3520000009bbf6.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameCAWHCACXX_l03n02_ogla_58.3520000009bbf6.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23686513
Sequences flagged as poor quality0
Sequence length101
%GC44

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG141350.016.3002135
GTATAGG110750.015.7033731
GTATTGG201150.015.378591
TATACCG72100.014.9567755
CCTATAC107650.014.916993
CTATACT146200.014.4605484
GTGTAGG91000.013.8897941
GTATAAG110200.013.8413681
ACTGTGC92000.013.6284958
GTCTAGG79550.013.6191581
ACTGTCC73000.013.4672618
TACACTG97400.013.4616255
GTATATA329000.013.3309571
CCTAGAC75600.013.2598683
TATACAG133200.013.1247475
TAGACGG37750.013.0877135
TCTATAC122250.012.9411813
GTATTAG118250.012.8187331
TGCGTTC128700.012.8050949
GTATAGA126350.012.7115081
Produced by FastQC (version 0.11.2)