FastQCFastQC Report
Sun 3 Sep 2017
CAWHCACXX_l03n02_ogla_57.3520000009bc7e.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameCAWHCACXX_l03n02_ogla_57.3520000009bc7e.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences36721356
Sequences flagged as poor quality0
Sequence length101
%GC43

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG229500.017.677815
GTATTGG352300.016.643971
GTATAGG169050.015.68461
TATACCG125250.014.7165925
TACACCG114000.014.5019915
GTATAGA217500.014.48467351
GTATAAG181700.014.2526621
TACACTG158850.014.1756965
CCTATAC164800.013.9244133
CTATACT239700.013.9138264
GTCTAGG123750.013.8616981
GGTGCGT256200.013.8475877
TATTGGG406850.013.7100512
TAGACTG118600.013.6991845
CCTAGAC121150.013.5687443
GTATATA524500.013.5531591
TATACAG219400.013.4681225
TGCGTTC235700.013.4399699
CCTACAC143250.013.1668793
TAGACAG133300.013.1507195
Produced by FastQC (version 0.11.2)