FastQCFastQC Report
Sun 3 Sep 2017
CAWHCACXX_l03n01_ogla_58.3510000009bbf9.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameCAWHCACXX_l03n01_ogla_58.3510000009bbf9.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23686513
Sequences flagged as poor quality0
Sequence length101
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG145800.016.517155
GTATAGG107200.016.2644181
CCTATAC108350.015.6941863
GTCTAGG80600.015.0894061
TATACCG76700.014.9866555
GTATAAG112750.014.6211031
TACACTG99950.014.5419725
GTATAGA127250.014.5230891
GTATTGG198350.014.4667821
TAGACTG76150.014.346395
CTATACT151100.014.1774064
TACACCG73200.013.9512165
GTGTAGG93950.013.4509221
TATACAG138700.013.3901355
GTATATA322300.013.369471
TAGACAG87800.013.2001845
CTACACT101800.013.1578834
GTCCTAG84050.013.1134651
ACTGTGC91050.013.0405028
TACACAG96550.012.9386265
Produced by FastQC (version 0.11.2)