FastQCFastQC Report
Sun 3 Sep 2017
CAWHCACXX_l03n01_ogla_57.3510000009bc71.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameCAWHCACXX_l03n01_ogla_57.3510000009bc71.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences36721356
Sequences flagged as poor quality0
Sequence length101
%GC43

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG243750.016.9344925
TATACCG122500.016.208295
GTATTGG354600.016.1713391
CCTAGAC114050.015.4933473
GTATAAG185400.015.4263871
GTATAGG170100.015.3615791
TACACTG158400.015.0237925
TAGACAG137500.014.4401145
CCTATAC162000.014.4260593
TACACAG160650.014.1037515
GTCTAGG130650.014.0363881
CTATACT248250.014.0252874
ACAGTGC174800.013.829698
TACACCG110000.013.7319265
TAGACTG123400.013.703515
ACTGTGC153050.013.5917978
GGTGCGT261550.013.4737617
GTGTAGG146500.013.2636521
TATACAG216150.013.2073675
GTATATA528100.013.1884961
Produced by FastQC (version 0.11.2)