FastQCFastQC Report
Sun 3 Sep 2017
CAWHCACXX_l03n01_ogla_55.3510000009bd63.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameCAWHCACXX_l03n01_ogla_55.3510000009bd63.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38696651
Sequences flagged as poor quality0
Sequence length101
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTATAGG239600.023.278241
CCTATAC255250.020.1352143
CTATACT298850.019.7884084
TATAGGG227400.018.2564242
TATACTG224100.017.2111135
CCCTATA239150.016.8430292
TATACTA396650.016.394225
TATACCG128500.014.8969265
TAGACTG128000.014.8808995
GTATTGG245100.014.6924681
GTGTAGG163550.014.2626361
ACTGTGC175600.014.1182458
TAGGGAT274750.014.0209654
TACACTG169550.013.979695
ATAGGGA256050.013.9318863
GTATATA483950.013.9201721
TACACAG167050.013.87612155
GTATAAG176600.013.8543241
TCCCTAT261150.013.6985241
TATACAG228300.013.461495
Produced by FastQC (version 0.11.2)