FastQCFastQC Report
Sun 3 Sep 2017
CAWHCACXX_l02n01_ogla_59.3510000009bcb4.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameCAWHCACXX_l02n01_ogla_59.3510000009bcb4.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences33670899
Sequences flagged as poor quality0
Sequence length101
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTATAGG156200.015.6664451
TATACTG229600.015.6637835
TATACCG110900.015.593465
GTATTGG295150.015.43903351
TACACTG169450.014.7474475
CTATACT221250.014.4297464
TAGACTG112350.014.2927665
CCTATAC159300.014.2853993
ACTGTGC152050.014.2748698
GTATAAG152300.013.8524741
TATTGGG323200.013.7586922
TACACAG150650.013.7495985
TACACCG117900.013.7408385
TCTATAC173850.013.663693
CCTAGAC111600.013.5374113
TATACAG203200.013.3968765
TAGACAG123750.013.12966255
GTGTAGG150750.012.8917021
TGCGTTC194950.012.8879319
GTATATA491100.012.7523361
Produced by FastQC (version 0.11.2)