FastQCFastQC Report
Sun 3 Sep 2017
CAWHCACXX_l02n01_ogla_25.3510000009bb3f.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameCAWHCACXX_l02n01_ogla_25.3510000009bb3f.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18492819
Sequences flagged as poor quality0
Sequence length101
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG62850.016.402945
TATACTG120850.015.567395
CTATACT123600.014.9519694
TACACCG61750.014.0793115
GTATAAG89400.013.9780111
GTATAGG85500.013.893161
CCTATAC84350.013.6863753
GTATATA263600.013.6631551
TATACAG109500.013.5799275
TACACTG87100.013.4724345
ACTGTGC81850.013.40416058
GTATTGG161900.013.3533951
TAGACAG68650.013.2870325
GTATTAG93450.013.1688431
TCTATAC98600.013.05748753
TACACAG83600.012.8999155
GTATAAT138900.012.7595021
TAGACTG57250.012.6964765
CCTAGAC59800.012.6317413
GTATAGA102750.012.4855911
Produced by FastQC (version 0.11.2)