FastQCFastQC Report
Sun 3 Sep 2017
CAWHCACXX_l01n02_ogla_67.3520000009bb62.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameCAWHCACXX_l01n02_ogla_67.3520000009bb62.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences56379146
Sequences flagged as poor quality0
Sequence length101
%GC44

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG368400.016.723985
GTATTGG473550.014.9813181
GTATAGG241650.014.8855591
TATACCG173500.014.8394955
GTATAAG264000.014.3273291
GTATATA824900.014.1648931
TAGACTG188800.014.0394955
CTATACT362500.014.0223284
TATACAG317750.013.5893175
TAGACAG189200.013.3570285
ACTGTGC233200.013.2175198
CCTATAC241700.013.1491263
TACACTG248050.013.0989415
GTGTAGG226750.013.0765561
GTATAGA314000.012.953891
TCTATAC307300.012.9083683
GTCTAGG184250.012.7659681
CCTACAC227500.012.7378433
TACACAG233600.012.6891075
CCTAGAC173400.012.6846743
Produced by FastQC (version 0.11.2)