FastQCFastQC Report
Sun 3 Sep 2017
CAWHCACXX_l01n02_ogla_66.3520000009bbdc.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameCAWHCACXX_l01n02_ogla_66.3520000009bbdc.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22764608
Sequences flagged as poor quality0
Sequence length101
%GC44

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTATTGG207300.015.8163771
TATACTG143950.015.6087915
GTATAGG103800.014.9237331
GTCTAGG82650.014.4882151
CCTATAC102200.014.2704233
GTATATA311750.014.0076821
GTATAAG104600.013.9918861
TATACCG75050.013.8615965
TATACAG133350.013.7503615
CTATACT146950.013.6423564
TCTATAC120050.013.0983093
TACACTG100500.013.092835
TAGACTG68100.013.04410655
TATTGGG237250.012.9756932
TTATACT176850.012.6789554
GTATTAG118050.012.6392381
GTACTAG160250.012.6319031
GTGTAGG96800.012.5176291
GTATAGA123100.012.429541
CCTAGAC78750.012.4269923
Produced by FastQC (version 0.11.2)