FastQCFastQC Report
Sun 3 Sep 2017
CAWHCACXX_l01n02_ogla_63.3520000009bd2d.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameCAWHCACXX_l01n02_ogla_63.3520000009bd2d.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences57523606
Sequences flagged as poor quality0
Sequence length101
%GC45

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG345700.016.132025
GTATAAG246150.015.7140641
TATACCG172450.015.232885
GTATAGG237000.015.0776431
GTATTGG450200.014.9247781
GTATATA737400.014.647391
GTATAGA301050.014.6320461
TAGACTG178900.014.4447025
CTATACT346300.014.1845674
TATACAG321050.014.130285
TCTATAC286900.013.8926133
TACACTG257300.013.7173145
GTCTAGG196650.013.435221
CCTATAC235950.013.4093223
GTATTAG289000.013.3348131
TACACCG181800.013.1952495
TACACAG244050.013.1190135
GTGTAGG238000.013.0975721
TAGACAG195500.013.0238125
TTATACT418850.012.9752444
Produced by FastQC (version 0.11.2)