FastQCFastQC Report
Sun 3 Sep 2017
CAWHCACXX_l01n01_ogla_66.3510000009bbdf.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameCAWHCACXX_l01n01_ogla_66.3510000009bbdf.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22764608
Sequences flagged as poor quality0
Sequence length101
%GC44

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTATAGG100900.017.0946711
TATACTG140700.016.3064695
TATACCG77200.016.1824915
TACACTG98350.015.4554825
GTATAAG107500.015.1169051
GTATTGG207650.014.6908981
TAGACTG70150.013.7459675
CTATACT147800.013.6590794
CCTATAC102800.013.6313443
GTCTAGG85500.013.2824151
GTATATA310850.013.16126251
CCTAGAC71650.012.9942033
GTGTAGG97050.012.9746481
ACTGTGC101250.012.946618
TTATACT173400.012.84785654
GTGCGTT158350.012.6571658
GTATAGA125300.012.6281121
TGCGTTC151850.012.4483089
TCTATAC121750.012.4070333
GTATTAG115850.012.34571
Produced by FastQC (version 0.11.2)