FastQCFastQC Report
Sun 3 Sep 2017
CAWHCACXX_l01n01_ogla_64.3510000009bcc1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameCAWHCACXX_l01n01_ogla_64.3510000009bcc1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31695880
Sequences flagged as poor quality0
Sequence length101
%GC45

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTATTGG296350.016.466521
TATACTG211200.016.3735265
TATACCG107750.015.0328675
TAGACTG101350.014.7635755
TACACTG150350.014.5963175
TACACCG109700.014.5058415
GTATAAG145550.014.3640471
TATACAG182800.014.3439135
TATTGGG325450.014.1868732
CTATACT209500.014.14833454
GTATAGG143950.014.1276011
GTGTAGG139000.014.0837641
GTCTAGG111500.013.8924571
TGCGTTC200900.013.6406449
TAGACAG119000.013.5318585
GGTGCGT232300.013.4120027
TACACAG139500.013.3820635
GTATATA448300.013.2806291
GTGCGTT219350.013.2727788
TCTATAC166600.013.0585993
Produced by FastQC (version 0.11.2)