FastQCFastQC Report
Sat 2 Sep 2017
CAWHCACXX_l01n01_ogla_62.3510000009bdea.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameCAWHCACXX_l01n01_ogla_62.3510000009bdea.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21162157
Sequences flagged as poor quality0
Sequence length101
%GC45

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG131400.016.8823855
GTATTGG208000.015.6940491
TATACCG71100.014.8986725
TAGACTG67300.014.6105835
CTATACT139000.014.3531364
GTATAGG97300.014.0644031
TACACTG99400.014.00211055
TATTGGG236550.013.5346542
GTATAAG93600.013.5035321
TACACAG92100.013.461495
TACACCG75300.013.1844985
TATACAG115650.012.9793735
ACTGCGC47600.012.7714568
GTATAGA114000.012.7126651
CTACACT97950.012.6575124
TCTATAC107750.012.6525163
TGCGTTC145750.012.6433029
TAGACAG77800.012.5776625
CCTATAC101150.012.3979633
GTGTATG135450.012.2430051
Produced by FastQC (version 0.11.2)