FastQCFastQC Report
Mon 3 Jul 2017
CA4RDACXX_l07n02_input_shoot_ctrl_rep3_pol-ii.3520000009367e.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameCA4RDACXX_l07n02_input_shoot_ctrl_rep3_pol-ii.3520000009367e.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6205261
Sequences flagged as poor quality0
Sequence length51
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATCGGAA47400.06.40685345
GATCGGA59950.05.703530345
TCGGAAG43350.05.604334445
GTATACC7851.7161588E-55.45334861
AAGAGCG26550.05.2531145
AGATCGG67500.05.09882444
Produced by FastQC (version 0.11.2)