FastQCFastQC Report
Mon 3 Jul 2017
CA4RDACXX_l07n02_chip_shoot_ctrl_rep2_pol-ii.35200000093420.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameCA4RDACXX_l07n02_chip_shoot_ctrl_rep2_pol-ii.35200000093420.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14243100
Sequences flagged as poor quality0
Sequence length51
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAGGGAA72050.09.61638145
GTAGGGA84200.08.89666145
TGTAGGG106500.08.47012245
GGGAAAG65900.07.85122345
GTGTAGG130300.07.19923845
CGTGTAG155000.07.05341645
AGGGAAA80100.06.59965344
TCGTGTA172750.06.22437344
GTCGTGT207700.06.03272645
Produced by FastQC (version 0.11.2)