FastQCFastQC Report
Mon 3 Jul 2017
CA4RDACXX_l07n02_chip_shoot_ctrl_rep1_pol-ii.352000000933de.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameCA4RDACXX_l07n02_chip_shoot_ctrl_rep1_pol-ii.352000000933de.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7386598
Sequences flagged as poor quality0
Sequence length51
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTAGGGA44550.08.63452245
TGTAGGG54000.08.58150445
TAGGGAA38000.07.8140744
AGGGAAA42350.07.22396145
GTGTAGG66000.07.05531445
TCGTGTA84500.06.33592745
GGGAAAG36000.06.31115445
CGTGTAG76600.06.196459345
GGAAAGA36050.06.11520145
GTCGTGT100100.05.820437445
Produced by FastQC (version 0.11.2)