CA4RDACXX_l07n02_chip_root_ctrl_rep3_pol-ii.35200000093562.fastq.gz FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	CA4RDACXX_l07n02_chip_root_ctrl_rep3_pol-ii.35200000093562.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	10360190
Sequences flagged as poor quality	0
Sequence length	51
%GC	51

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTCCGAT	2190	0.0	12.738911	10
CTTCCGA	2690	0.0	10.455174	9
TCCGATC	2985	0.0	9.270003	11
TGTGCTC	3250	0.0	9.079783	3
GTGTGCT	3330	0.0	8.997681	2
CCGATCT	3365	0.0	8.959048	12
GTGCTCT	3355	0.0	8.392642	4
CGTGTGC	3485	0.0	8.145037	1
TCTTCCG	4120	0.0	7.264813	8
TGCTCTT	4325	0.0	6.820815	5
AGAGCGT	4795	0.0	6.7554975	44
GAGCGTC	4925	0.0	6.62295	45
GCTCTTC	4570	0.0	6.5995	6
GAAGAGC	8140	0.0	5.858699	45
ATCGGAA	10980	0.0	5.6135545	45
AAGAGCG	6025	0.0	5.5631266	45
CGATCTG	2820	0.0	5.0261283	13